Package: proteinAnnotation 0.5.1

proteinAnnotation: ProteinAnnotation

Display protein information.

Authors:Ben Bruyneel <[email protected]>

proteinAnnotation_0.5.1.tar.gz
proteinAnnotation_0.5.1.zip(r-4.5)proteinAnnotation_0.5.1.zip(r-4.4)proteinAnnotation_0.5.1.zip(r-4.3)
proteinAnnotation_0.5.1.tgz(r-4.4-any)proteinAnnotation_0.5.1.tgz(r-4.3-any)
proteinAnnotation_0.5.1.tar.gz(r-4.5-noble)proteinAnnotation_0.5.1.tar.gz(r-4.4-noble)
proteinAnnotation_0.5.1.tgz(r-4.4-emscripten)proteinAnnotation_0.5.1.tgz(r-4.3-emscripten)
proteinAnnotation.pdf |proteinAnnotation.html✨
proteinAnnotation/json (API)

# Install 'proteinAnnotation' in R:
install.packages('proteinAnnotation', repos = c('https://benbruyneel.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/benbruyneel/proteinannotation/issues

On CRAN:

mass-spectrometryproteomicsproteomics-data-analysis

33 exports 0.36 score 101 dependencies 1 scripts

Last updated 7 months agofrom:c46d0da3c3. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 31 2024
R-4.5-winNOTEAug 31 2024
R-4.5-linuxNOTEAug 31 2024
R-4.4-winOKAug 31 2024
R-4.4-macOKAug 31 2024
R-4.3-winOKAug 31 2024
R-4.3-macOKAug 31 2024

Exports:addDataToProteinaddStyleElementboxDataboxDimensionscontainsModificationcreateProteinDatadfToModPositionsdisplayProteindisplayProteinTextendPositiongetAllModPositionInProteingetModPositionInProteingetPeptideStartgetPositionsgraphsAdjustlog10addlog10pmapPeptidesToProteinmodPositionsmodPositionsToDFOVATableplotProteinVariableprepareproteinCoveragerowsAndcolumnsstandardProteinstartPositiontheme_minimal_adaptedtranslateRangesToColorstranslateRangeToColorstranslateToFixedColorstranslateToGradientColorswhichModifications

Dependencies:askpassbase64encbigDbio3dbitopsbootbslibcachemcellrangerclassclicolorspacecommonmarkcpp11crayoncurldata.tableDescToolsdigestdplyre1071evaluateExactexpmfansifarverfastmapfontawesomefsgenericsggforceggplot2gldgluegtgtablehighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclelmommagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigpolyclipprettyunitsprogressproxypurrrr3dmolR6rappdirsRColorBrewerRcppRcppEigenreactablereactRreadxlrematchrlangrmarkdownrootSolverstudioapisassscalesstringistringrsyssystemfontstibbletidyrtidyselecttinytextweenrutf8V8vctrsviridisLitewithrxfunxml2yaml

Readme and manuals

Help Manual

Help pageTopics
addDataToProteinaddDataToProtein
addStyleElementaddStyleElement
boxDataboxData
boxDimensionsboxDimensions
containsModificationcontainsModification
createProteinDatacreateProteinData
dfToModPositionsdfToModPositions
displayProteindisplayProtein
displayProteinTextdisplayProteinText
endPositionendPosition
getAllModPositionInProteingetAllModPositionInProtein
getModPositionInProteingetModPositionInProtein
getPeptideStartgetPeptideStart
getPositionLettersgetPositionLetters
getPositionNumbersgetPositionNumbers
getPositionsgetPositions
graphsAdjustgraphsAdjust
ifelse replacement for properly returning all datatypes.ifelseProper
is.Classis.Class
log10addlog10add
log10plog10p
mapPeptidesToProteinmapPeptidesToProtein
modPositionsmodPositions
modPositionsToDFmodPositionsToDF
OVATableOVATable
plotProteinVariableplotProteinVariable
prepareprepare
proteinCoverageproteinCoverage
reduceColorsreduceColors
rowAndColumnsrowsAndcolumns
standardProteinstandardProtein
startPositionstartPosition
strMultiReplaceAllstrMultiReplaceAll
theme_minimal_adaptedtheme_minimal_adapted
translateRangesToColorstranslateRangesToColors
translateRangeColorstranslateRangeToColors
translateToFixedColorstranslateToFixedColors
translateToGradientColorstranslateToGradientColors
whichModificationswhichModifications