Package: proteinAnnotation 0.5.1

proteinAnnotation: ProteinAnnotation

Display protein information.

Authors:Ben Bruyneel <[email protected]>

proteinAnnotation_0.5.1.tar.gz
proteinAnnotation_0.5.1.zip(r-4.7)proteinAnnotation_0.5.1.zip(r-4.6)proteinAnnotation_0.5.1.zip(r-4.5)
proteinAnnotation_0.5.1.tgz(r-4.6-any)proteinAnnotation_0.5.1.tgz(r-4.5-any)
proteinAnnotation_0.5.1.tar.gz(r-4.7-any)proteinAnnotation_0.5.1.tar.gz(r-4.6-any)
proteinAnnotation_0.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
proteinAnnotation/json (API)

# Install 'proteinAnnotation' in R:
install.packages('proteinAnnotation', repos = c('https://benbruyneel.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/benbruyneel/proteinannotation/issues

On CRAN:

Conda:

mass-spectrometryproteomicsproteomics-data-analysis

1.70 score 1 scripts 33 exports 105 dependencies

Last updated from:c46d0da3c3. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR170
source / vignettesOK168
linux-release-x86_64ERROR164
macos-release-arm64ERROR99
macos-oldrel-arm64ERROR110
windows-develERROR99
windows-releaseERROR89
windows-oldrelERROR126
wasm-releaseOK150

Exports:addDataToProteinaddStyleElementboxDataboxDimensionscontainsModificationcreateProteinDatadfToModPositionsdisplayProteindisplayProteinTextendPositiongetAllModPositionInProteingetModPositionInProteingetPeptideStartgetPositionsgraphsAdjustlog10addlog10pmapPeptidesToProteinmodPositionsmodPositionsToDFOVATableplotProteinVariableprepareproteinCoveragerowsAndcolumnsstandardProteinstartPositiontheme_minimal_adaptedtranslateRangesToColorstranslateRangeToColorstranslateToFixedColorstranslateToGradientColorswhichModifications

Dependencies:askpassbase64encbigDbio3dbitbit64bitopsbootbslibcachemcellrangerclassclicliprcommonmarkcpp11crayoncurldata.tableDescToolsdigestdplyre1071evaluateExactexpmfarverfastmapfontawesomeforcatsfsgenericsggforceggplot2gldgluegtgtablehavenhighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclelitedownlmommagrittrmarkdownMASSMatrixmemoisemimemvtnormopensslpillarpkgconfigpolyclipprettyunitsprogressproxypurrrr3dmolR6rappdirsRColorBrewerRcppreactablereactRreadrreadxlrematchrlangrmarkdownrootSolverstudioapiS7sassscalesstringistringrsyssystemfontstibbletidyrtidyselecttinytextweenrtzdbutf8V8vctrsviridisLitevroomwithrxfunxml2yaml

Readme and manuals

Help Manual

Help pageTopics
addDataToProteinaddDataToProtein
addStyleElementaddStyleElement
boxDataboxData
boxDimensionsboxDimensions
containsModificationcontainsModification
createProteinDatacreateProteinData
dfToModPositionsdfToModPositions
displayProteindisplayProtein
displayProteinTextdisplayProteinText
endPositionendPosition
getAllModPositionInProteingetAllModPositionInProtein
getModPositionInProteingetModPositionInProtein
getPeptideStartgetPeptideStart
getPositionLettersgetPositionLetters
getPositionNumbersgetPositionNumbers
getPositionsgetPositions
graphsAdjustgraphsAdjust
ifelse replacement for properly returning all datatypes.ifelseProper
is.Classis.Class
log10addlog10add
log10plog10p
mapPeptidesToProteinmapPeptidesToProtein
modPositionsmodPositions
modPositionsToDFmodPositionsToDF
OVATableOVATable
plotProteinVariableplotProteinVariable
prepareprepare
proteinCoverageproteinCoverage
reduceColorsreduceColors
rowAndColumnsrowsAndcolumns
standardProteinstandardProtein
startPositionstartPosition
strMultiReplaceAllstrMultiReplaceAll
theme_minimal_adaptedtheme_minimal_adapted
translateRangesToColorstranslateRangesToColors
translateRangeColorstranslateRangeToColors
translateToFixedColorstranslateToFixedColors
translateToGradientColorstranslateToGradientColors
whichModificationswhichModifications