Package: proteinAnnotation 0.5.1

proteinAnnotation: ProteinAnnotation

Display protein information.

Authors:Ben Bruyneel <[email protected]>

proteinAnnotation_0.5.1.tar.gz
proteinAnnotation_0.5.1.zip(r-4.5)proteinAnnotation_0.5.1.zip(r-4.4)proteinAnnotation_0.5.1.zip(r-4.3)
proteinAnnotation_0.5.1.tgz(r-4.5-any)proteinAnnotation_0.5.1.tgz(r-4.4-any)proteinAnnotation_0.5.1.tgz(r-4.3-any)
proteinAnnotation_0.5.1.tar.gz(r-4.5-noble)proteinAnnotation_0.5.1.tar.gz(r-4.4-noble)
proteinAnnotation_0.5.1.tgz(r-4.4-emscripten)proteinAnnotation_0.5.1.tgz(r-4.3-emscripten)
proteinAnnotation.pdf |proteinAnnotation.html
proteinAnnotation/json (API)

# Install 'proteinAnnotation' in R:
install.packages('proteinAnnotation', repos = c('https://benbruyneel.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/benbruyneel/proteinannotation/issues

On CRAN:

Conda:

mass-spectrometryproteomicsproteomics-data-analysis

1.70 score 1 scripts 33 exports 109 dependencies

Last updated 1 years agofrom:c46d0da3c3. Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-winNOTEMar 17 2025
R-4.5-macNOTEMar 17 2025
R-4.5-linuxNOTEMar 17 2025
R-4.4-winOKMar 17 2025
R-4.4-macOKMar 17 2025
R-4.4-linuxOKMar 17 2025
R-4.3-winOKMar 17 2025
R-4.3-macOKMar 17 2025

Exports:addDataToProteinaddStyleElementboxDataboxDimensionscontainsModificationcreateProteinDatadfToModPositionsdisplayProteindisplayProteinTextendPositiongetAllModPositionInProteingetModPositionInProteingetPeptideStartgetPositionsgraphsAdjustlog10addlog10pmapPeptidesToProteinmodPositionsmodPositionsToDFOVATableplotProteinVariableprepareproteinCoveragerowsAndcolumnsstandardProteinstartPositiontheme_minimal_adaptedtranslateRangesToColorstranslateRangeToColorstranslateToFixedColorstranslateToGradientColorswhichModifications

Dependencies:askpassbase64encbigDbio3dbitbit64bitopsbootbslibcachemcellrangerclassclicliprcolorspacecommonmarkcpp11crayoncurldata.tableDescToolsdigestdplyre1071evaluateExactexpmfansifarverfastmapfontawesomeforcatsfsgenericsggforceggplot2gldgluegtgtablehavenhighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclelmommagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigpolyclipprettyunitsprogressproxypurrrr3dmolR6rappdirsRColorBrewerRcppRcppEigenreactablereactRreadrreadxlrematchrlangrmarkdownrootSolverstudioapisassscalesstringistringrsyssystemfontstibbletidyrtidyselecttinytextweenrtzdbutf8V8vctrsviridisLitevroomwithrxfunxml2yaml

Readme and manuals

Help Manual

Help pageTopics
addDataToProteinaddDataToProtein
addStyleElementaddStyleElement
boxDataboxData
boxDimensionsboxDimensions
containsModificationcontainsModification
createProteinDatacreateProteinData
dfToModPositionsdfToModPositions
displayProteindisplayProtein
displayProteinTextdisplayProteinText
endPositionendPosition
getAllModPositionInProteingetAllModPositionInProtein
getModPositionInProteingetModPositionInProtein
getPeptideStartgetPeptideStart
getPositionLettersgetPositionLetters
getPositionNumbersgetPositionNumbers
getPositionsgetPositions
graphsAdjustgraphsAdjust
ifelse replacement for properly returning all datatypes.ifelseProper
is.Classis.Class
log10addlog10add
log10plog10p
mapPeptidesToProteinmapPeptidesToProtein
modPositionsmodPositions
modPositionsToDFmodPositionsToDF
OVATableOVATable
plotProteinVariableplotProteinVariable
prepareprepare
proteinCoverageproteinCoverage
reduceColorsreduceColors
rowAndColumnsrowsAndcolumns
standardProteinstandardProtein
startPositionstartPosition
strMultiReplaceAllstrMultiReplaceAll
theme_minimal_adaptedtheme_minimal_adapted
translateRangesToColorstranslateRangesToColors
translateRangeColorstranslateRangeToColors
translateToFixedColorstranslateToFixedColors
translateToGradientColorstranslateToGradientColors
whichModificationswhichModifications